Skip to main content

Reading large compressed files in python

This might be a simple question but I can't seem to find the answer to this or why it is not working on this specific case.

I want to read large files, they can be compressed or not. I used contextlib to write a contextmanager function to handle this. Then using the with statement I read the files in the main script.

My problem here is that the script uses a lot of memory then get's killed (testing using a compressed file). What am I doing wrong? Should I approach this differently?

def process_vcf(location):
    logging.info('Processing vcf')
    logging.debug(location)
    with read_compressed_or_not(location) as vcf:
        for line in vcf.readlines():
            if line.startswith('#'):
                logging.debug(line)

@contextmanager
def read_compressed_or_not(location):
    if location.endswith('.gz'):
        try: 
            file = gzip.open(location)
            yield file
        finally:
            file.close()
    else:
        try: 
            file = open(location, 'r')
            yield file
        finally:
            file.close()


source https://stackoverflow.com/questions/70159969/reading-large-compressed-files-in-python

Comments

Popular posts from this blog

How to show number of registered users in Laravel based on usertype?

i'm trying to display data from the database in the admin dashboard i used this: <?php use Illuminate\Support\Facades\DB; $users = DB::table('users')->count(); echo $users; ?> and i have successfully get the correct data from the database but what if i want to display a specific data for example in this user table there is "usertype" that specify if the user is normal user or admin i want to user the same code above but to display a specific usertype i tried this: <?php use Illuminate\Support\Facades\DB; $users = DB::table('users')->count()->WHERE usertype =admin; echo $users; ?> but it didn't work, what am i doing wrong? source https://stackoverflow.com/questions/68199726/how-to-show-number-of-registered-users-in-laravel-based-on-usertype

Why is my reports service not connecting?

I am trying to pull some data from a Postgres database using Node.js and node-postures but I can't figure out why my service isn't connecting. my routes/index.js file: const express = require('express'); const router = express.Router(); const ordersCountController = require('../controllers/ordersCountController'); const ordersController = require('../controllers/ordersController'); const weeklyReportsController = require('../controllers/weeklyReportsController'); router.get('/orders_count', ordersCountController); router.get('/orders', ordersController); router.get('/weekly_reports', weeklyReportsController); module.exports = router; My controllers/weeklyReportsController.js file: const weeklyReportsService = require('../services/weeklyReportsService'); const weeklyReportsController = async (req, res) => { try { const data = await weeklyReportsService; res.json({data}) console

How to split a rinex file if I need 24 hours data

Trying to divide rinex file using the command gfzrnx but getting this error. While doing that getting this error msg 'gfzrnx' is not recognized as an internal or external command Trying to split rinex file using the command gfzrnx. also install'gfzrnx'. my doubt is I need to run this program in 'gfzrnx' or in 'cmdprompt'. I am expecting a rinex file with 24 hrs or 1 day data.I Have 48 hrs data in RINEX format. Please help me to solve this issue. source https://stackoverflow.com/questions/75385367/how-to-split-a-rinex-file-if-i-need-24-hours-data