Skip to main content

Stream large XML file directly from GridFS to xmltodict parsing

I am using Motor for async MongoDB operations. I have a gridfs storage where I store large XML files (typically 30+ MB in size) in chunks of 8 MBs. I want to incrementally parse the XML file using xmltodict. Here is how my code looks.

async def read_file(file_id):
    gfs_out: AsyncIOMotorGridOut = await gfs_bucket.open_download_stream(file_id)

    tmpfile = tempfile.SpooledTemporaryFile(mode="w+b")
    while data := await gfs_out.readchunk():
        tmpfile.write(data)

    xmltodict.parse(tmpfile)

I am pulling all the chunks out one by one and storing them in a temporary file in memory and then parsing the entire file through xmltodict. Ideally I would want toparse it incrementally as I don't need the entire xml object from the get go.

The documentation for xmltodict suggests that we can add custom handlers to parse a stream, like this example:

>>> def handle_artist(_, artist):
...     print(artist['name'])
...     return True
>>> 
>>> xmltodict.parse(GzipFile('discogs_artists.xml.gz'),
...     item_depth=2, item_callback=handle_artist)
A Perfect Circle
Fantômas
King Crimson
Chris Potter
...

But the problem with this is that it expects a file-like object with a synchronous read() method, not a coroutine. Is there any way it can be achieved? Any help would be greatly appreciated.



source https://stackoverflow.com/questions/75838141/stream-large-xml-file-directly-from-gridfs-to-xmltodict-parsing

Comments

Popular posts from this blog

How to show number of registered users in Laravel based on usertype?

i'm trying to display data from the database in the admin dashboard i used this: <?php use Illuminate\Support\Facades\DB; $users = DB::table('users')->count(); echo $users; ?> and i have successfully get the correct data from the database but what if i want to display a specific data for example in this user table there is "usertype" that specify if the user is normal user or admin i want to user the same code above but to display a specific usertype i tried this: <?php use Illuminate\Support\Facades\DB; $users = DB::table('users')->count()->WHERE usertype =admin; echo $users; ?> but it didn't work, what am i doing wrong? source https://stackoverflow.com/questions/68199726/how-to-show-number-of-registered-users-in-laravel-based-on-usertype

Why is my reports service not connecting?

I am trying to pull some data from a Postgres database using Node.js and node-postures but I can't figure out why my service isn't connecting. my routes/index.js file: const express = require('express'); const router = express.Router(); const ordersCountController = require('../controllers/ordersCountController'); const ordersController = require('../controllers/ordersController'); const weeklyReportsController = require('../controllers/weeklyReportsController'); router.get('/orders_count', ordersCountController); router.get('/orders', ordersController); router.get('/weekly_reports', weeklyReportsController); module.exports = router; My controllers/weeklyReportsController.js file: const weeklyReportsService = require('../services/weeklyReportsService'); const weeklyReportsController = async (req, res) => { try { const data = await weeklyReportsService; res.json({data}) console...

How to split a rinex file if I need 24 hours data

Trying to divide rinex file using the command gfzrnx but getting this error. While doing that getting this error msg 'gfzrnx' is not recognized as an internal or external command Trying to split rinex file using the command gfzrnx. also install'gfzrnx'. my doubt is I need to run this program in 'gfzrnx' or in 'cmdprompt'. I am expecting a rinex file with 24 hrs or 1 day data.I Have 48 hrs data in RINEX format. Please help me to solve this issue. source https://stackoverflow.com/questions/75385367/how-to-split-a-rinex-file-if-i-need-24-hours-data