Skip to main content

Using PyGAD for feature selection

I'm trying to create a Python script for feature selection using PyGAD

The code below shows my previous attempt, but I haven’t achieved the desired result. Can you please help me with the correct implementation? Im taking the primary example shown on the package's documentation page.The error Im receiving is:

AttributeError: 'tuple' object has no attribute 'tb_frame'

My attempt so far:

import pygad
import numpy

from sklearn.model_selection import train_test_split, cross_val_score
from src.learner_params import target_column, model_features

from sklearn.datasets import load_breast_cancer
from lightgbm import LGBMClassifier as lgbm

bc = load_breast_cancer()
bst = lgbm(random_state = 42)

function_inputs = bc.feature_names

X, y = bc.data,bc.target
X = pd.DataFrame(X, columns=bc.feature_names)
X_train, X_test, y_train, y_test = train_test_split(X,
                                                    y,
                                                    random_state=42)



def fitness_func(ga_instance, solution, solution_idx):
    # output = numpy.sum(solution*function_inputs)
    score = cross_val_score(bst, X_train.loc[:,solution], y_train, scoring="roc_auc", cv = 2).mean()
    fitness = score
    return fitness



fitness_function = fitness_func

num_generations = 50
num_parents_mating = 4

sol_per_pop = 8
num_genes = len(X_train)

init_range_low = -2
init_range_high = 5

parent_selection_type = "sss"
keep_parents = 1

crossover_type = "single_point"

mutation_type = "random"
mutation_percent_genes = 10



ga_instance = pygad.GA(num_generations=num_generations,
                       num_parents_mating=num_parents_mating,
                       fitness_func=fitness_function,
                       sol_per_pop=sol_per_pop,
                       num_genes=num_genes,
                       init_range_low=init_range_low,
                       init_range_high=init_range_high,
                       parent_selection_type=parent_selection_type,
                       keep_parents=keep_parents,
                       crossover_type=crossover_type,
                       mutation_type=mutation_type,
                       mutation_percent_genes=mutation_percent_genes)


ga_instance.run()


source https://stackoverflow.com/questions/76715689/using-pygad-for-feature-selection

Comments

Popular posts from this blog

ValueError: X has 10 features, but LinearRegression is expecting 1 features as input

So, I am trying to predict the model but its throwing error like it has 10 features but it expacts only 1. So I am confused can anyone help me with it? more importantly its not working for me when my friend runs it. It works perfectly fine dose anyone know the reason about it? cv = KFold(n_splits = 10) all_loss = [] for i in range(9): # 1st for loop over polynomial orders poly_order = i X_train = make_polynomial(x, poly_order) loss_at_order = [] # initiate a set to collect loss for CV for train_index, test_index in cv.split(X_train): print('TRAIN:', train_index, 'TEST:', test_index) X_train_cv, X_test_cv = X_train[train_index], X_test[test_index] t_train_cv, t_test_cv = t[train_index], t[test_index] reg.fit(X_train_cv, t_train_cv) loss_at_order.append(np.mean((t_test_cv - reg.predict(X_test_cv))**2)) # collect loss at fold all_loss.append(np.mean(loss_at_order)) # collect loss at order plt.plot(np.log(al...

Sorting large arrays of big numeric stings

I was solving bigSorting() problem from hackerrank: Consider an array of numeric strings where each string is a positive number with anywhere from to digits. Sort the array's elements in non-decreasing, or ascending order of their integer values and return the sorted array. I know it works as follows: def bigSorting(unsorted): return sorted(unsorted, key=int) But I didnt guess this approach earlier. Initially I tried below: def bigSorting(unsorted): int_unsorted = [int(i) for i in unsorted] int_sorted = sorted(int_unsorted) return [str(i) for i in int_sorted] However, for some of the test cases, it was showing time limit exceeded. Why is it so? PS: I dont know exactly what those test cases were as hacker rank does not reveal all test cases. source https://stackoverflow.com/questions/73007397/sorting-large-arrays-of-big-numeric-stings

How to load Javascript with imported modules?

I am trying to import modules from tensorflowjs, and below is my code. test.html <!DOCTYPE html> <html lang="en"> <head> <meta charset="UTF-8"> <title>Document</title </head> <body> <script src="https://cdn.jsdelivr.net/npm/@tensorflow/tfjs@2.0.0/dist/tf.min.js"></script> <script type="module" src="./test.js"></script> </body> </html> test.js import * as tf from "./node_modules/@tensorflow/tfjs"; import {loadGraphModel} from "./node_modules/@tensorflow/tfjs-converter"; const MODEL_URL = './model.json'; const model = await loadGraphModel(MODEL_URL); const cat = document.getElementById('cat'); model.execute(tf.browser.fromPixels(cat)); Besides, I run the server using python -m http.server in my command prompt(Windows 10), and this is the error prompt in the console log of my browser: Failed to loa...